If you find any of these links no longer work, or have other websites that you think should be on this list, please let me know.
Mycological Links
General Mycology Websites
Mycology Online - http://www.mycology.adelaide.edu.au/
Mycological Resources on the Internet: Collections http://mycology.cornell.edu/fcollect.html
Doctor Fungus http://mycosesstudygroup.org/
Aspergillus website http://www.aspergillus.org.uk/
Mycetoma Research Center, Khartoum, Sudan www.mycetoma.edu.sd/
Mycoses Study Group Education and Research Consortium www.msgerc.org/
SEPTOMICS-Website www.septomics.de
Antifungals and treatment guidelines
FungiMics app https://itunes.apple.com/us/app/fungimics/id1095747789?mt=8
European Medicines Agency http://www.ema.europa.eu/ema/
Micafungin https://www.astellas.us/docs/mycamine.pdf
Caspofungin https://www.merck.com/product/usa/pi_circulars/c/cancidas/cancidas_pi.pdf
Posaconazole https://www.merck.com/product/usa/pi_circulars/n/noxafil/noxafil_pi.pdf
Infectious Diseases Society of America guidelines for fungal infection http://www.idsociety.org/Organism/#Fungi
Access to Medicine Index https://accesstomedicineindex.org/
Fungal Idenitification
Morphology of medically important fungi http://labmed.ucsf.edu/education/residency/fung_morph/launchpage.html
Mycology image gallery - https://eportal.mountsinai.ca/Microbiology//mig/index.shtml
Atlas of Clinical Fungi http://www.clinicalfungi.org/
Fungal collections
Westerdijk Fungal Biodiversity Institute (former CBS) http://www.westerdijkinstitute.nl/
American Type Culture Collection https://www.atcc.org/
Mycobank, central repository of species information http://www.mycobank.org/
Fungal Genetics Stock Center http://www.fgsc.net/
ARS Culture Collection (NRRL) - https://nrrl.ncaur.usda.gov/
Belgian Co-ordinated Collections of Micro-organisms bccm.belspo.be/
Genomics
FungiDB http://fungidb.org/fungidb/
The Broad Institute https://www.broadinstitute.org/fungal-genome-initiative
JGI fungi portal http://genome.jgi.doe.gov/programs/fungi/index.jsf
Fungal genome tools http://tools.fungalgenomes.org/
Fungal genome resources at NCBI https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3379888/
Fungal genome wide analysis of orthologous clusters http://www.bioinfogenome.net/OrthoVenn/
Genomic tools http://molbiol-tools.ca/Genomics.htm
RNA-seq analysis http://rnaseq.pathogenportal.org/
Fungal genomes at Welcome Trust Sanger Institute http://www.sanger.ac.uk/resources/downloads/fungi/ Stanford Genomic Resources http://genome-www.stanford.edu/
Other Societies
American Society of Microbiology https://www.asm.org/
European Confederation of Medical Mycology https://www.ecmm.info/
European Society of Clinical Microbiology and Infectious Diseases https://www.escmid.org/
International Mycological Association www.ima-mycology.org/
Phylogeny (web server analysis)
RAxML web server (T-Rex) http://www.trex.uqam.ca/index.php?action=raxml&project=trex
IQ-TREEhttp://iqtree.cibiv.univie.ac.at/
Phylobayes http://www.atgc-montpellier.fr/phylobayes/
MrBayes at MABL http://www.phylogeny.fr/one_task.cgi?task_type=mrbayes
Moltools Phylogeny http://molbiol-tools.ca/Phylogeny.htm
Taxonomy
Fungal tree of life - http://www.tolweb.org/tree/
Index Fungorum http://www.indexfungorum.org/
International Subcommission on Trichoderma and Hypocrea Taxonomy www.isth.info
International Commission of Penicillium and Aspergillus www.aspergilluspenicillium.org/